Checkrain. Also, I restored the rootfs and rejailbroke my device and now the menus are working and it just seemed like I needed a full restart. Also, I think the problem was that when I was doing the complete upgrade once I was jailbroken within Cydia, it didn't download a couple things and there were errors there. This time it did the complete upgrade without any errors and everything is working fine now. @kevshinz helped me out quite a bit also so thank you guys. Consider this issue solved <3
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Zionah's post in Mod Menus not appearing was marked as the answer